STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3K4R4_9FIRMMotA_ExbB domain-containing protein. (202 aa)    
Predicted Functional Partners:
H3K4R3_9FIRM
Uncharacterized protein.
 
 
 0.981
H3K4R2_9FIRM
TonB family domain-containing protein.
 
 
 0.930
H3K9F9_9FIRM
Uncharacterized protein.
 
 
 0.919
H3K4U2_9FIRM
Uncharacterized protein.
 
 
 0.913
H3KA80_9FIRM
Outer membrane protein assembly complex, YaeT protein.
  
     0.749
H3KAA1_9FIRM
Uncharacterized protein.
  
     0.742
LptB
ABC transporter domain-containing protein.
  
   
 0.732
lpxA
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
  
  
 0.711
H3KA78_9FIRM
Uncharacterized protein.
  
   
 0.710
H3K4V3_9FIRM
Uncharacterized protein.
 
  
 0.708
Your Current Organism:
Megamonas funiformis
NCBI taxonomy Id: 437897
Other names: DSM 19343, JCM 14723, M. funiformis, Megamonas funiformis Sakon et al. 2008, Megamonas sp. Marseille-P3344, YIT 11815
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