Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_001940335_00408 | GCA_001940335_01227 | GCA_001940335_00408 | GCA_001940335_01227 | Unannotated protein. | Unannotated protein. | 0.721 |
GCA_001940335_00408 | GCA_001940335_01441 | GCA_001940335_00408 | GCA_001940335_01441 | Unannotated protein. | Unannotated protein. | 0.778 |
GCA_001940335_00408 | GCA_001940335_01503 | GCA_001940335_00408 | GCA_001940335_01503 | Unannotated protein. | Unannotated protein; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication [...] | 0.730 |
GCA_001940335_00408 | GCA_001940335_01566 | GCA_001940335_00408 | GCA_001940335_01566 | Unannotated protein. | Unannotated protein. | 0.795 |
GCA_001940335_00408 | GCA_001940335_01567 | GCA_001940335_00408 | GCA_001940335_01567 | Unannotated protein. | Unannotated protein. | 0.815 |
GCA_001940335_00408 | GCA_001940335_03148 | GCA_001940335_00408 | GCA_001940335_03148 | Unannotated protein. | Unannotated protein. | 0.690 |
GCA_001940335_00408 | GCA_001940335_05008 | GCA_001940335_00408 | GCA_001940335_05008 | Unannotated protein. | Unannotated protein. | 0.720 |
GCA_001940335_00408 | dnaX | GCA_001940335_00408 | GCA_001940335_03082 | Unannotated protein. | Unannotated protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.730 |
GCA_001940335_01227 | GCA_001940335_00408 | GCA_001940335_01227 | GCA_001940335_00408 | Unannotated protein. | Unannotated protein. | 0.721 |
GCA_001940335_01227 | GCA_001940335_01441 | GCA_001940335_01227 | GCA_001940335_01441 | Unannotated protein. | Unannotated protein. | 0.976 |
GCA_001940335_01227 | GCA_001940335_01503 | GCA_001940335_01227 | GCA_001940335_01503 | Unannotated protein. | Unannotated protein; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication [...] | 0.994 |
GCA_001940335_01227 | GCA_001940335_01566 | GCA_001940335_01227 | GCA_001940335_01566 | Unannotated protein. | Unannotated protein. | 0.914 |
GCA_001940335_01227 | GCA_001940335_01567 | GCA_001940335_01227 | GCA_001940335_01567 | Unannotated protein. | Unannotated protein. | 0.467 |
GCA_001940335_01227 | GCA_001940335_02837 | GCA_001940335_01227 | GCA_001940335_02837 | Unannotated protein. | Unannotated protein. | 0.990 |
GCA_001940335_01227 | GCA_001940335_03148 | GCA_001940335_01227 | GCA_001940335_03148 | Unannotated protein. | Unannotated protein. | 0.993 |
GCA_001940335_01227 | GCA_001940335_04332 | GCA_001940335_01227 | GCA_001940335_04332 | Unannotated protein. | Unannotated protein. | 0.837 |
GCA_001940335_01227 | GCA_001940335_05008 | GCA_001940335_01227 | GCA_001940335_05008 | Unannotated protein. | Unannotated protein. | 0.992 |
GCA_001940335_01227 | dnaX | GCA_001940335_01227 | GCA_001940335_03082 | Unannotated protein. | Unannotated protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.994 |
GCA_001940335_01441 | GCA_001940335_00408 | GCA_001940335_01441 | GCA_001940335_00408 | Unannotated protein. | Unannotated protein. | 0.778 |
GCA_001940335_01441 | GCA_001940335_01227 | GCA_001940335_01441 | GCA_001940335_01227 | Unannotated protein. | Unannotated protein. | 0.976 |
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