STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001940335_01864Unannotated protein. (296 aa)    
Predicted Functional Partners:
GCA_001940335_04023
Unannotated protein.
  
 
 0.821
tal
Unannotated protein; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
  
 0.780
GCA_001940335_03389
Unannotated protein; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
  
 
 0.769
pgi
Unannotated protein; Belongs to the GPI family.
     
 0.750
GCA_001940335_03384
Unannotated protein; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis.
    
 0.749
GCA_001940335_00389
Unannotated protein.
  
 
 0.735
GCA_001940335_04075
Unannotated protein.
    
 0.730
GCA_001940335_01404
Unannotated protein.
   
 0.695
glk
Unannotated protein; Belongs to the bacterial glucokinase family.
    
 0.689
GCA_001940335_00008
Unannotated protein.
    
 0.673
Your Current Organism:
Pseudomonas marincola
NCBI taxonomy Id: 437900
Other names: JCM 14761, KMM 3042, NRIC 0729, P. marincola, Pseudomonas marincola Romanenko et al. 2008, Pseudomonas sp. SI85-2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.