Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_001940335_01712 | GCA_001940335_02139 | GCA_001940335_01712 | GCA_001940335_02139 | Unannotated protein. | Unannotated protein; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family. | 0.723 |
GCA_001940335_02133 | GCA_001940335_02134 | GCA_001940335_02133 | GCA_001940335_02134 | Unannotated protein. | Unannotated protein. | 0.789 |
GCA_001940335_02133 | GCA_001940335_02135 | GCA_001940335_02133 | GCA_001940335_02135 | Unannotated protein. | Unannotated protein; Possible subunit of a heme lyase. | 0.803 |
GCA_001940335_02133 | GCA_001940335_02136 | GCA_001940335_02133 | GCA_001940335_02136 | Unannotated protein. | Unannotated protein. | 0.803 |
GCA_001940335_02133 | GCA_001940335_02137 | GCA_001940335_02133 | GCA_001940335_02137 | Unannotated protein. | Unannotated protein. | 0.803 |
GCA_001940335_02133 | GCA_001940335_02139 | GCA_001940335_02133 | GCA_001940335_02139 | Unannotated protein. | Unannotated protein; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family. | 0.803 |
GCA_001940335_02133 | GCA_001940335_02141 | GCA_001940335_02133 | GCA_001940335_02141 | Unannotated protein. | Unannotated protein; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family. | 0.617 |
GCA_001940335_02133 | ccmA | GCA_001940335_02133 | GCA_001940335_02142 | Unannotated protein. | Unannotated protein; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. | 0.617 |
GCA_001940335_02133 | ccmC | GCA_001940335_02133 | GCA_001940335_02140 | Unannotated protein. | Unannotated protein; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family. | 0.803 |
GCA_001940335_02133 | ccmE | GCA_001940335_02133 | GCA_001940335_02138 | Unannotated protein. | Unannotated protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. | 0.803 |
GCA_001940335_02134 | GCA_001940335_02133 | GCA_001940335_02134 | GCA_001940335_02133 | Unannotated protein. | Unannotated protein. | 0.789 |
GCA_001940335_02134 | GCA_001940335_02135 | GCA_001940335_02134 | GCA_001940335_02135 | Unannotated protein. | Unannotated protein; Possible subunit of a heme lyase. | 0.976 |
GCA_001940335_02134 | GCA_001940335_02136 | GCA_001940335_02134 | GCA_001940335_02136 | Unannotated protein. | Unannotated protein. | 0.978 |
GCA_001940335_02134 | GCA_001940335_02137 | GCA_001940335_02134 | GCA_001940335_02137 | Unannotated protein. | Unannotated protein. | 0.991 |
GCA_001940335_02134 | GCA_001940335_02139 | GCA_001940335_02134 | GCA_001940335_02139 | Unannotated protein. | Unannotated protein; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family. | 0.866 |
GCA_001940335_02134 | GCA_001940335_02141 | GCA_001940335_02134 | GCA_001940335_02141 | Unannotated protein. | Unannotated protein; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family. | 0.905 |
GCA_001940335_02134 | ccmA | GCA_001940335_02134 | GCA_001940335_02142 | Unannotated protein. | Unannotated protein; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. | 0.885 |
GCA_001940335_02134 | ccmC | GCA_001940335_02134 | GCA_001940335_02140 | Unannotated protein. | Unannotated protein; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family. | 0.951 |
GCA_001940335_02134 | ccmE | GCA_001940335_02134 | GCA_001940335_02138 | Unannotated protein. | Unannotated protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. | 0.956 |
GCA_001940335_02135 | GCA_001940335_02133 | GCA_001940335_02135 | GCA_001940335_02133 | Unannotated protein; Possible subunit of a heme lyase. | Unannotated protein. | 0.803 |
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