STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001940335_02502Unannotated protein; Belongs to the ABC transporter superfamily. (233 aa)    
Predicted Functional Partners:
GCA_001940335_02500
Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
GCA_001940335_02499
Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.991
GCA_001940335_02501
Unannotated protein.
 
 
0.988
GCA_001940335_02498
Unannotated protein.
 
 
 0.979
GCA_001940335_00303
Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.954
GCA_001940335_00304
Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.921
GCA_001940335_00305
Unannotated protein.
 
 
 0.849
GCA_001940335_00302
Unannotated protein.
 
 
0.718
GCA_001940335_02399
Unannotated protein.
 
 
 0.655
GCA_001940335_02166
Unannotated protein; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
   
   0.610
Your Current Organism:
Pseudomonas marincola
NCBI taxonomy Id: 437900
Other names: JCM 14761, KMM 3042, NRIC 0729, P. marincola, Pseudomonas marincola Romanenko et al. 2008, Pseudomonas sp. SI85-2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.