STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001940335_02795Unannotated protein. (296 aa)    
Predicted Functional Partners:
GCA_001940335_02796
Unannotated protein.
 
     0.759
GCA_001940335_02056
Unannotated protein.
  
     0.731
GCA_001940335_00180
Unannotated protein.
    
  0.668
GCA_001940335_04840
Unannotated protein.
  
   0.667
GCA_001940335_03033
Unannotated protein.
  
   0.555
rpoA
Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.548
GCA_001940335_02794
Unannotated protein.
       0.476
GCA_001940335_04573
Unannotated protein.
  
     0.472
GCA_001940335_04014
Unannotated protein.
  
   0.464
GCA_001940335_04491
Unannotated protein.
  
     0.446
Your Current Organism:
Pseudomonas marincola
NCBI taxonomy Id: 437900
Other names: JCM 14761, KMM 3042, NRIC 0729, P. marincola, Pseudomonas marincola Romanenko et al. 2008, Pseudomonas sp. SI85-2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.