GCA_001940335_03045 protein (Pseudomonas marincola)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

GCA_001940335_03045

Unannotated protein. (99 aa)

Predicted Functional Partners:

GCA_001940335_02148

0.716

GCA_001940335_01161

0.712

GCA_001940335_03887

0.706

GCA_001940335_02170

0.676

GCA_001940335_03523

0.662

GCA_001940335_00759

0.646

GCA_001940335_03044

0.645

GCA_001940335_04889

0.641

GCA_001940335_02179

0.639

GCA_001940335_03303

0.578

Your Current Organism:

Pseudomonas marincola

NCBI taxonomy Id: 437900
Other names: JCM 14761, KMM 3042, NRIC 0729, P. marincola, Pseudomonas marincola Romanenko et al. 2008, Pseudomonas sp. SI85-2B

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_001940335_00759	GCA_001940335_01161	Unannotated protein.	Unannotated protein.	0.654
GCA_001940335_00759	GCA_001940335_02148	Unannotated protein.	Unannotated protein.	0.666
GCA_001940335_00759	GCA_001940335_02179	Unannotated protein.	Unannotated protein.	0.661
GCA_001940335_00759	GCA_001940335_03045	Unannotated protein.	Unannotated protein.	0.646
GCA_001940335_00759	GCA_001940335_03303	Unannotated protein.	Unannotated protein; Binds the second messenger bis-(3'-5') cyclic dimeric guanosine monophosphate (c-di-GMP). Can bind two c-di-GMP molecules per monomer. May play a role in bacterial second-messenger regulated processes. Binding to c-di-GMP induces a conformational change of the C- and N-termini resulting in the exposure of a highly negative surface on one side of the protein to a possible effector protein.	0.621
GCA_001940335_00759	GCA_001940335_03523	Unannotated protein.	Unannotated protein.	0.458
GCA_001940335_01161	GCA_001940335_00759	Unannotated protein.	Unannotated protein.	0.654
GCA_001940335_01161	GCA_001940335_02148	Unannotated protein.	Unannotated protein.	0.704
GCA_001940335_01161	GCA_001940335_02170	Unannotated protein.	Unannotated protein.	0.540
GCA_001940335_01161	GCA_001940335_02179	Unannotated protein.	Unannotated protein.	0.675
GCA_001940335_01161	GCA_001940335_03045	Unannotated protein.	Unannotated protein.	0.712
GCA_001940335_01161	GCA_001940335_03303	Unannotated protein.	Unannotated protein; Binds the second messenger bis-(3'-5') cyclic dimeric guanosine monophosphate (c-di-GMP). Can bind two c-di-GMP molecules per monomer. May play a role in bacterial second-messenger regulated processes. Binding to c-di-GMP induces a conformational change of the C- and N-termini resulting in the exposure of a highly negative surface on one side of the protein to a possible effector protein.	0.619
GCA_001940335_01161	GCA_001940335_03523	Unannotated protein.	Unannotated protein.	0.473
GCA_001940335_02148	GCA_001940335_00759	Unannotated protein.	Unannotated protein.	0.666
GCA_001940335_02148	GCA_001940335_01161	Unannotated protein.	Unannotated protein.	0.704
GCA_001940335_02148	GCA_001940335_02170	Unannotated protein.	Unannotated protein.	0.751
GCA_001940335_02148	GCA_001940335_02179	Unannotated protein.	Unannotated protein.	0.782
GCA_001940335_02148	GCA_001940335_03045	Unannotated protein.	Unannotated protein.	0.716
GCA_001940335_02148	GCA_001940335_03303	Unannotated protein.	Unannotated protein; Binds the second messenger bis-(3'-5') cyclic dimeric guanosine monophosphate (c-di-GMP). Can bind two c-di-GMP molecules per monomer. May play a role in bacterial second-messenger regulated processes. Binding to c-di-GMP induces a conformational change of the C- and N-termini resulting in the exposure of a highly negative surface on one side of the protein to a possible effector protein.	0.709
GCA_001940335_02148	GCA_001940335_03887	Unannotated protein.	Unannotated protein.	0.451