STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001940335_03497Unannotated protein. (209 aa)    
Predicted Functional Partners:
GCA_001940335_03496
Unannotated protein.
 
 
 0.990
GCA_001940335_03498
Unannotated protein.
 
 0.958
GCA_001940335_04093
Unannotated protein.
 
  
 0.830
GCA_001940335_04097
Unannotated protein.
 
  
 0.827
GCA_001940335_03207
Unannotated protein.
 
 0.798
GCA_001940335_01373
Unannotated protein.
  
 0.542
GCA_001940335_01866
Unannotated protein.
  
 0.542
GCA_001940335_02628
Unannotated protein.
  
 0.542
GCA_001940335_02771
Unannotated protein.
  
 0.541
GCA_001940335_02890
Unannotated protein.
  
 0.541
Your Current Organism:
Pseudomonas marincola
NCBI taxonomy Id: 437900
Other names: JCM 14761, KMM 3042, NRIC 0729, P. marincola, Pseudomonas marincola Romanenko et al. 2008, Pseudomonas sp. SI85-2B
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.