Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_001940335_02217 | GCA_001940335_03864 | GCA_001940335_02217 | GCA_001940335_03864 | Unannotated protein. | Unannotated protein. | 0.785 |
GCA_001940335_03864 | GCA_001940335_02217 | GCA_001940335_03864 | GCA_001940335_02217 | Unannotated protein. | Unannotated protein. | 0.785 |
GCA_001940335_03864 | GCA_001940335_04575 | GCA_001940335_03864 | GCA_001940335_04575 | Unannotated protein. | Unannotated protein. | 0.825 |
GCA_001940335_03864 | rplB | GCA_001940335_03864 | GCA_001940335_02537 | Unannotated protein. | Unannotated protein; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.781 |
GCA_001940335_03864 | rplC | GCA_001940335_03864 | GCA_001940335_02534 | Unannotated protein. | Unannotated protein; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.816 |
GCA_001940335_03864 | rplF | GCA_001940335_03864 | GCA_001940335_02549 | Unannotated protein. | Unannotated protein; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.853 |
GCA_001940335_03864 | rplM | GCA_001940335_03864 | GCA_001940335_03731 | Unannotated protein. | Unannotated protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.823 |
GCA_001940335_03864 | rplO | GCA_001940335_03864 | GCA_001940335_02553 | Unannotated protein. | Unannotated protein; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.819 |
GCA_001940335_03864 | rplU | GCA_001940335_03864 | GCA_001940335_00441 | Unannotated protein. | Unannotated protein; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.774 |
GCA_001940335_03864 | rplX | GCA_001940335_03864 | GCA_001940335_02545 | Unannotated protein. | Unannotated protein; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.815 |
GCA_001940335_03864 | rpsQ | GCA_001940335_03864 | GCA_001940335_02543 | Unannotated protein. | Unannotated protein; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.790 |
GCA_001940335_04575 | GCA_001940335_03864 | GCA_001940335_04575 | GCA_001940335_03864 | Unannotated protein. | Unannotated protein. | 0.825 |
GCA_001940335_04575 | rplB | GCA_001940335_04575 | GCA_001940335_02537 | Unannotated protein. | Unannotated protein; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.812 |
GCA_001940335_04575 | rplC | GCA_001940335_04575 | GCA_001940335_02534 | Unannotated protein. | Unannotated protein; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.807 |
GCA_001940335_04575 | rplF | GCA_001940335_04575 | GCA_001940335_02549 | Unannotated protein. | Unannotated protein; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.978 |
GCA_001940335_04575 | rplM | GCA_001940335_04575 | GCA_001940335_03731 | Unannotated protein. | Unannotated protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.813 |
GCA_001940335_04575 | rplO | GCA_001940335_04575 | GCA_001940335_02553 | Unannotated protein. | Unannotated protein; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.942 |
GCA_001940335_04575 | rplX | GCA_001940335_04575 | GCA_001940335_02545 | Unannotated protein. | Unannotated protein; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.807 |
GCA_001940335_04575 | rpsQ | GCA_001940335_04575 | GCA_001940335_02543 | Unannotated protein. | Unannotated protein; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.674 |
rplB | GCA_001940335_03864 | GCA_001940335_02537 | GCA_001940335_03864 | Unannotated protein; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | Unannotated protein. | 0.781 |
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