STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001940335_04084Unannotated protein. (261 aa)    
Predicted Functional Partners:
GCA_001940335_04083
Unannotated protein.
 
 0.993
GCA_001940335_04082
Unannotated protein.
  
 
 0.963
GCA_001940335_04059
Unannotated protein.
 
  
 0.931
hmgA
Unannotated protein; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
 
  
 0.930
GCA_001940335_02026
Unannotated protein.
    
 0.804
GCA_001940335_04061
Unannotated protein.
 
  
 0.803
GCA_001940335_02109
Unannotated protein.
  
 
 0.800
aroA
Unannotated protein; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
    
 0.742
GCA_001940335_00193
Unannotated protein.
   
 
 0.703
GCA_001940335_02491
Unannotated protein.
  
  
  0.693
Your Current Organism:
Pseudomonas marincola
NCBI taxonomy Id: 437900
Other names: JCM 14761, KMM 3042, NRIC 0729, P. marincola, Pseudomonas marincola Romanenko et al. 2008, Pseudomonas sp. SI85-2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.