STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001940335_04394Unannotated protein. (271 aa)    
Predicted Functional Partners:
GCA_001940335_04393
Unannotated protein.
       0.773
GCA_001940335_04395
Unannotated protein.
       0.773
GCA_001940335_04396
Unannotated protein.
       0.773
GCA_001940335_04392
Unannotated protein.
       0.762
GCA_001940335_04397
Unannotated protein.
       0.737
GCA_001940335_04391
Unannotated protein.
       0.572
GCA_001940335_04390
Unannotated protein.
       0.547
GCA_001940335_04389
Unannotated protein.
       0.402
Your Current Organism:
Pseudomonas marincola
NCBI taxonomy Id: 437900
Other names: JCM 14761, KMM 3042, NRIC 0729, P. marincola, Pseudomonas marincola Romanenko et al. 2008, Pseudomonas sp. SI85-2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.