STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001940335_04446Unannotated protein. (230 aa)    
Predicted Functional Partners:
nuoC
Unannotated protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family.
   
 
 0.952
GCA_001940335_02611
Unannotated protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
  0.797
GCA_001940335_00180
Unannotated protein.
     
 0.784
GCA_001940335_00196
Unannotated protein.
  
 0.773
GCA_001940335_00089
Unannotated protein.
  
 0.755
GCA_001940335_02976
Unannotated protein.
  
 0.755
GCA_001940335_03835
Unannotated protein.
  
 0.755
GCA_001940335_02201
Unannotated protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
  0.743
GCA_001940335_02798
Unannotated protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
  0.733
GCA_001940335_03229
Unannotated protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
  0.730
Your Current Organism:
Pseudomonas marincola
NCBI taxonomy Id: 437900
Other names: JCM 14761, KMM 3042, NRIC 0729, P. marincola, Pseudomonas marincola Romanenko et al. 2008, Pseudomonas sp. SI85-2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.