STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001940335_04713Unannotated protein. (242 aa)    
Predicted Functional Partners:
GCA_001940335_04711
Unannotated protein.
 
     0.787
GCA_001940335_04708
Unannotated protein.
 
     0.769
GCA_001940335_04710
Unannotated protein.
 
     0.769
GCA_001940335_04709
Unannotated protein.
 
  
 0.735
leuS
Unannotated protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 
 0.731
GCA_001940335_04712
Unannotated protein.
 
     0.722
GCA_001940335_03371
Unannotated protein; The beta chain is an electron transfer unit containing 4 cysteine clusters involved in the formation of iron-sulfur centers.
   
    0.712
GCA_001940335_04688
Unannotated protein.
  
 
 0.629
GCA_001940335_02566
Unannotated protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
 
 0.588
GCA_001940335_04938
Unannotated protein.
  
 
 0.588
Your Current Organism:
Pseudomonas marincola
NCBI taxonomy Id: 437900
Other names: JCM 14761, KMM 3042, NRIC 0729, P. marincola, Pseudomonas marincola Romanenko et al. 2008, Pseudomonas sp. SI85-2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.