STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AZC_0107Putative permease; The major facilitator superfamily. (421 aa)    
Predicted Functional Partners:
AZC_3097
Conserved hypothetical protein; Major facilitator superfamily.
 
     0.705
AZC_0768
Putative MFS transporter.
  
     0.670
AZC_2858
Permeases; The major facilitator superfamily.
  
     0.665
fef-1
Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. Belongs to the polypeptide deformylase family.
       0.535
AZC_0106
Hypothetical ATP-binding protein.
       0.505
AZC_3224
Putative 4-methylmuconolactone transporter; Major facilitator family (MFS).
  
    0.498
AZC_1904
Putative transport protein.
 
     0.484
AZC_1141
Glucose transport protein.
  
    0.479
AZC_0109
Helicase; C-terminal:DEAD/DEAH box helicase, N-terminal.
       0.438
Your Current Organism:
Azorhizobium caulinodans
NCBI taxonomy Id: 438753
Other names: A. caulinodans ORS 571, Azorhizobium caulinodans ORS 571, Azorhizobium caulinodans str. ORS 571, Azorhizobium caulinodans strain ORS 571, Rhizobium sp. ORS 571
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