STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lysR-5Transcriptional regulator; LysR family; Belongs to the LysR transcriptional regulatory family. (343 aa)    
Predicted Functional Partners:
AZC_0245
DoxD-like protein.
 
     0.747
lysR-22
Putative transcriptional regulator; LysR-family; Belongs to the LysR transcriptional regulatory family.
  
     0.660
AZC_0244
Dioxygenase.
 
     0.581
AZC_0243
Putative esterase.
 
     0.510
AZC_1707
Putative transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.455
lysR-9
Regulatory protein; LysR, substrate-binding precursor; Belongs to the LysR transcriptional regulatory family.
  
     0.432
lysR-23
Regulatory protein; LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
  
     0.426
AZC_3869
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.405
Your Current Organism:
Azorhizobium caulinodans
NCBI taxonomy Id: 438753
Other names: A. caulinodans ORS 571, Azorhizobium caulinodans ORS 571, Azorhizobium caulinodans str. ORS 571, Azorhizobium caulinodans strain ORS 571, Rhizobium sp. ORS 571
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