STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AZC_0553Conserved hypothetical protein; MhpC, putative hydrolases or acyltransferase. (256 aa)    
Predicted Functional Partners:
AZC_0036
Putative fatty acid synthase transmembrane protein.
  
 
 0.737
dapE
Proteobacterial succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.
  
   0.736
AZC_2519
Conserved hypothetical protein; Similar ATP12 ATPase.
  
     0.645
AZC_1561
Putative NADH dehydrogenase (ubiquinone) Fe-S protein 4.
  
     0.615
AZC_2297
Uncharacterized conserved protein.
  
     0.461
AZC_0551
Conserved hypothetical transmembrane protein precursor.
       0.449
nodC
N-acetylglucosaminyltransferase; Involved in the synthesis of Nod factor, a sulfated N-acyl- beta-1,4-tetrasaccharide of N-acetylglucosamine which initiates a series of events in the host plant species leading eventually to nodulation; Belongs to the NodC/HAS family.
  
     0.431
Your Current Organism:
Azorhizobium caulinodans
NCBI taxonomy Id: 438753
Other names: A. caulinodans ORS 571, Azorhizobium caulinodans ORS 571, Azorhizobium caulinodans str. ORS 571, Azorhizobium caulinodans strain ORS 571, Rhizobium sp. ORS 571
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