STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AZC_0708Putative transcriptional regulator. (146 aa)    
Predicted Functional Partners:
nifU
NifU-like protein.
  
  
 0.800
dut
Deoxy UTP pyrophosphatase subfamily 1; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.
       0.748
AZC_0709
Cysteine synthase A.
 
  
 0.703
nifS
Nitrogenase cofactor synthesis protein; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
  
  
 0.697
AZC_3616
Putative cysteine desulfurase; nifS-like protein.
  
  
 0.697
AZC_3179
Conserved hypothetical protein; Transcriptional regulator, Rrf2.
  
     0.630
AZC_3609
HesB/YadR/YfhF; Belongs to the HesB/IscA family.
  
  
 0.556
AZC_3416
HesB/YadR/YfhF family protein; Belongs to the HesB/IscA family.
  
  
 0.542
dnaJ-5
Heat shock protein.
  
  
 0.460
nifQ
NifQ protein.
  
  
 0.459
Your Current Organism:
Azorhizobium caulinodans
NCBI taxonomy Id: 438753
Other names: A. caulinodans ORS 571, Azorhizobium caulinodans ORS 571, Azorhizobium caulinodans str. ORS 571, Azorhizobium caulinodans strain ORS 571, Rhizobium sp. ORS 571
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