STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AZC_0905Putative O-methyltransferase; Belongs to the methyltransferase superfamily. (235 aa)    
Predicted Functional Partners:
AZC_0906
Hypothetical protein.
       0.682
rimP
Uncharacterized protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.
 
     0.547
AZC_4478
Ribosomal protein L11 methyltransferase.
 
     0.541
rsmI
Conserved hypothetical protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
  
 0.521
AZC_2563
Hypothetical protein; GIY-YIG catalytic domain.
  
  
 0.514
AZC_0903
Serine protease; Trypsin family.
       0.510
AZC_0904
Unknown protein.
       0.510
AZC_0907
Farnesyltranstransferase; Belongs to the FPP/GGPP synthase family.
       0.502
AZC_0902
Periplasmic serine protease.
       0.438
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
 
     0.410
Your Current Organism:
Azorhizobium caulinodans
NCBI taxonomy Id: 438753
Other names: A. caulinodans ORS 571, Azorhizobium caulinodans ORS 571, Azorhizobium caulinodans str. ORS 571, Azorhizobium caulinodans strain ORS 571, Rhizobium sp. ORS 571
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