STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lipAPutative LipA protein; Surface antigen (cell envelope biogenesis, outer membrane). (137 aa)    
Predicted Functional Partners:
AZC_0399
Conserved hypothetical protein; CHP02301.
 
     0.699
AZC_2571
Protein conserved in bacteria, COG3521.
  
     0.668
cycH
Cytochrome c-type biogenesis protein.
 
     0.657
AZC_1130
Sensor protein.
 
   
 0.645
AZC_4244
Hypothetical protein.
  
     0.635
AZC_2946
Hypothetical protein.
  
     0.634
AZC_0949
Hypothetical protein.
  
     0.615
AZC_1201
Hypothetical protein.
  
     0.610
AZC_3715
Hypothetical protein.
  
     0.610
AZC_1080
Hypothetical protein.
  
     0.598
Your Current Organism:
Azorhizobium caulinodans
NCBI taxonomy Id: 438753
Other names: A. caulinodans ORS 571, Azorhizobium caulinodans ORS 571, Azorhizobium caulinodans str. ORS 571, Azorhizobium caulinodans strain ORS 571, Rhizobium sp. ORS 571
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.