STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AZC_1154Sel1-like repeat protein. (265 aa)    
Predicted Functional Partners:
selA
L-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
       0.782
fdhE
Formate dehydrogenase accessory protein; Necessary for formate dehydrogenase activity. Belongs to the FdhE family.
       0.782
AZC_1153
Translation elongation factor; Selenocysteine-specific: small GTP-binding protein domain.
       0.780
AZC_1152
Hypothetical protein.
       0.773
AZC_2814
Putative exopolysaccharide regulatory protein; TPR repeat, SEL1 subfamily.
  
     0.770
AZC_3220
Cell morphology protein.
  
 
 0.712
AZC_3408
ATPase.
  
 0.561
AZC_1151
Hypothetical protein.
       0.548
AZC_0903
Serine protease; Trypsin family.
  
 
 0.535
AZC_3221
Twin-arginine translocation pathway signal precursor.
  
 
 0.526
Your Current Organism:
Azorhizobium caulinodans
NCBI taxonomy Id: 438753
Other names: A. caulinodans ORS 571, Azorhizobium caulinodans ORS 571, Azorhizobium caulinodans str. ORS 571, Azorhizobium caulinodans strain ORS 571, Rhizobium sp. ORS 571
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