STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fdhEFormate dehydrogenase accessory protein; Necessary for formate dehydrogenase activity. Belongs to the FdhE family. (306 aa)    
Predicted Functional Partners:
AZC_1157
Formate dehydrogenase gamma subunit.
 
  
 0.957
AZC_1153
Translation elongation factor; Selenocysteine-specific: small GTP-binding protein domain.
 
   
 0.956
selA
L-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
   
 0.955
AZC_1158
Formate dehydrogenase beta subunit.
  
 0.952
AZC_1159
Formate dehydrogenase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.938
AZC_1160
Twin-arginine translocation pathway signal precursor.
 
 
 
 0.916
selD
Selenide water dikinase; Synthesizes selenophosphate from selenide and ATP.
 
   
 0.797
AZC_1154
Sel1-like repeat protein.
       0.782
AZC_1152
Hypothetical protein.
       0.781
AZC_1162
Transglutaminase-like enzyme.
 
     0.736
Your Current Organism:
Azorhizobium caulinodans
NCBI taxonomy Id: 438753
Other names: A. caulinodans ORS 571, Azorhizobium caulinodans ORS 571, Azorhizobium caulinodans str. ORS 571, Azorhizobium caulinodans strain ORS 571, Rhizobium sp. ORS 571
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