STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AZC_1979Putative ABC-type nitrate/sulfonate/bicarbonate transport system periplasmic component. (356 aa)    
Predicted Functional Partners:
AZC_1980
Short-chain dehydrogenase/reductase SDR.
       0.773
AZC_1978
Putative ABC-type nitrate/sulfonate/bicarbonate transport system permease component.
 
    0.771
AZC_1977
Putative ABC transporter ATP-binding component.
  
    0.730
AZC_2472
Bacterial periplasmic substrate-binding protein.
  
     0.687
AZC_2502
ABC transporter substrate binding protein.
  
     0.618
AZC_1975
Iron alcohol dehydrogenase.
       0.553
AZC_1976
Putative glycosyl hydrolase; BNR repeat.
       0.553
AZC_3896
ABC transporter ATPase protein.
 
    0.539
AZC_2363
ABC transporter ATP-binding protein.
 
    0.520
AZC_2362
ABC transporter permease protein.
 
    0.506
Your Current Organism:
Azorhizobium caulinodans
NCBI taxonomy Id: 438753
Other names: A. caulinodans ORS 571, Azorhizobium caulinodans ORS 571, Azorhizobium caulinodans str. ORS 571, Azorhizobium caulinodans strain ORS 571, Rhizobium sp. ORS 571
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