STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AZC_2115Isocitrate lyase family protein. (301 aa)    
Predicted Functional Partners:
AZC_2118
Isochorismatase family protein.
 
    0.937
AZC_2114
MmgE/PrpD family protein.
 
  
 0.913
gltA
Citrate synthase; Belongs to the citrate synthase family.
 
 0.893
AZC_2116
Hydantoin utilization protein B.
 
     0.836
AZC_2117
Hydantoin utilization protein A.
 
     0.814
AZC_2105
Fumarate reductase; Succinate dehydrogenase flavoprotein-like.
 
     0.741
gntR-15
Transcriptional regulator; GntR family.
 
     0.695
AZC_2672
Protein of unknown function; DUF453.
 
  
 0.684
AZC_2109
Branched-chain amino acid transport system substrate-binding protein.
 
     0.667
AZC_2111
Amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.662
Your Current Organism:
Azorhizobium caulinodans
NCBI taxonomy Id: 438753
Other names: A. caulinodans ORS 571, Azorhizobium caulinodans ORS 571, Azorhizobium caulinodans str. ORS 571, Azorhizobium caulinodans strain ORS 571, Rhizobium sp. ORS 571
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