STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhmDL-alanine-DL-glutamate epimerase; Catalyzes the dehydration of L-rhamnonate to 2-keto-3-deoxy- L-rhamnonate (KDR). (393 aa)    
Predicted Functional Partners:
AZC_2269
Short-chain dehydrogenase; Reductase SDR.
    
 0.973
AZC_2272
Putative sugar phosphate permease.
 
  
 0.855
AZC_2270
Putative 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase.
 
  
 0.789
AZC_2268
Putative MFS permease.
 
  
 0.682
iclR-4
Transcriptional regulator; IclR family.
 
   
 0.651
AZC_4410
2-keto-3-deoxy-6-phosphogluconate aldolase.
 
   
 0.503
AZC_1798
Putative aldolase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.496
AZC_4409
Putative 2-keto-3-deoxy-galactonokinase.
 
  
 0.474
AZC_0555
2-dehydro-3-deoxyglucarate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.470
AZC_2267
L-lactate dehydrogenase.
     
 0.417
Your Current Organism:
Azorhizobium caulinodans
NCBI taxonomy Id: 438753
Other names: A. caulinodans ORS 571, Azorhizobium caulinodans ORS 571, Azorhizobium caulinodans str. ORS 571, Azorhizobium caulinodans strain ORS 571, Rhizobium sp. ORS 571
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