STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
iclR-4Transcriptional regulator; IclR family. (275 aa)    
Predicted Functional Partners:
AZC_4402
Allophanate hydrolase subunit 2.
  
    0.858
iclR-10
Transcriptional regulator; IclR family.
  
     0.775
iclR-7
Regulatory protein.
  
     0.774
iclR-12
Transcriptional regulator; IclR family.
  
     0.753
iclR-8
Transcriptional regulator.
  
     0.752
rhmD
L-alanine-DL-glutamate epimerase; Catalyzes the dehydration of L-rhamnonate to 2-keto-3-deoxy- L-rhamnonate (KDR).
 
   
 0.651
AZC_2272
Putative sugar phosphate permease.
  
  
 0.607
AZC_2873
enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
  
 0.542
AZC_1352
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
   
  
 0.540
AZC_2269
Short-chain dehydrogenase; Reductase SDR.
  
    0.540
Your Current Organism:
Azorhizobium caulinodans
NCBI taxonomy Id: 438753
Other names: A. caulinodans ORS 571, Azorhizobium caulinodans ORS 571, Azorhizobium caulinodans str. ORS 571, Azorhizobium caulinodans strain ORS 571, Rhizobium sp. ORS 571
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