STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lysR-47Transcriptional regulator; LysR family; Belongs to the LysR transcriptional regulatory family. (309 aa)    
Predicted Functional Partners:
AZC_2782
Type 1 glutamine amidotransferase; GATase1-like domain.
 
     0.713
AZC_2781
Uncharacterized conserved protein.
 
     0.638
AZC_4424
Putative membrane protein; Involved in the export of O-antigen and teichoic acid.
  
    0.518
AZC_4423
Putative uncharacterized protein; Involved in exopolysaccharide biosynthesis.
  
     0.460
lysR-25
Transcriptional regulator; LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.458
AZC_1280
Transcriptional regulator.
  
 
   0.422
AZC_0154
Hypothetical protein.
  
     0.407
Your Current Organism:
Azorhizobium caulinodans
NCBI taxonomy Id: 438753
Other names: A. caulinodans ORS 571, Azorhizobium caulinodans ORS 571, Azorhizobium caulinodans str. ORS 571, Azorhizobium caulinodans strain ORS 571, Rhizobium sp. ORS 571
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.