STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AZC_2885Outer membrane autotransporter barrel protein. (2446 aa)    
Predicted Functional Partners:
fhaC
Putative hemolysin activation/secretion protein.
 
 
 0.848
AZC_3227
Putative outer membrane autotransporter barrel precursor.
 
  
0.682
AZC_1504
Putative serine protease; Outer membrane autotransporter precursor.
 
  
0.674
AZC_0989
Putative transmembrane protein.
 
     0.599
AZC_3098
Putative ATPase.
  
  
 0.520
AZC_1359
Bacterial membrane protein of unknown function.
  
     0.518
AZC_0448
Hypothetical protein.
  
     0.506
AZC_0550
SCP-like extracellular protein precursor.
  
    0.504
AZC_3484
Hypothetical protein.
   
    0.487
AZC_0036
Putative fatty acid synthase transmembrane protein.
  
 
 0.481
Your Current Organism:
Azorhizobium caulinodans
NCBI taxonomy Id: 438753
Other names: A. caulinodans ORS 571, Azorhizobium caulinodans ORS 571, Azorhizobium caulinodans str. ORS 571, Azorhizobium caulinodans strain ORS 571, Rhizobium sp. ORS 571
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