STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AZC_3238RNA polymerase sigma-70 factor; ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily. (216 aa)    
Predicted Functional Partners:
fecR-2
Putative iron siderophore sensor protein.
 
 0.916
fecR-3
Putative iron siderophore sensor protein.
 
 0.831
fecR
FecR protein.
 
 
 0.822
AZC_2427
RNA polymerase; ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.768
AZC_3240
TonB-dependent siderophore receptor precursor.
 
  
 0.681
AZC_1202
RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.644
AZC_2453
Putative sigma-70 factor; ECF subfamily; Belongs to the sigma-70 factor family.
  
   
 0.631
rpoH
Sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
  
  
 0.568
AZC_4109
Putative DNA-directed RNA polymerase sigma subunit; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.539
AZC_3237
ABC-type cobalamin; Fe3+-siderophores transport systems, ATPase components.
  
  
 0.530
Your Current Organism:
Azorhizobium caulinodans
NCBI taxonomy Id: 438753
Other names: A. caulinodans ORS 571, Azorhizobium caulinodans ORS 571, Azorhizobium caulinodans str. ORS 571, Azorhizobium caulinodans strain ORS 571, Rhizobium sp. ORS 571
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