STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AZC_3245Putative siderophore biosynthesis protein. (443 aa)    
Predicted Functional Partners:
AZC_3247
L-lysine 6-monooxygenase protein; Lysine N(6)-hydroxylase.
 
 0.998
AZC_3246
Vicibactin biosynthesis non-ribosomal peptide synthase protein.
  
 0.897
AZC_3244
Efflux transporter inner membrane protein.
 
     0.821
AZC_3243
Methionine gamma lyase.
  
    0.782
AZC_3248
Ferrichrome-binding periplasmic protein precursor.
 
   
 0.608
AZC_0181
Putative isoflavone reductase.
  
    0.553
AZC_1328
TonB-dependent receptor.
 
   
 0.538
AZC_3988
ABC-type siderophore export system; Fused ATPase and permease components.
 
  
 0.488
AZC_0036
Putative fatty acid synthase transmembrane protein.
 
  
 0.476
pvdS
Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.466
Your Current Organism:
Azorhizobium caulinodans
NCBI taxonomy Id: 438753
Other names: A. caulinodans ORS 571, Azorhizobium caulinodans ORS 571, Azorhizobium caulinodans str. ORS 571, Azorhizobium caulinodans strain ORS 571, Rhizobium sp. ORS 571
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