STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nodTRND efflux system outer membrane lipoprotein. (517 aa)    
Predicted Functional Partners:
hlyD-6
Secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.904
AZC_3286
Putative multidrug resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.890
AZC_4436
Putative multidrug resistance efflux pump.
 
 
 0.805
AZC_2429
HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.772
hlyD-4
Secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.752
AZC_2334
Glutathione reductase; Maintains high levels of reduced glutathione.
      
 0.727
hae1
Hydrophobe/amphiphile efflux-1.
 
 0.723
hlyD-2
Secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.713
AZC_3910
Hydrophobe/amphiphile efflux-1; HAE1.
 
 0.686
hlyD-3
Secretion protein HlyD precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.683
Your Current Organism:
Azorhizobium caulinodans
NCBI taxonomy Id: 438753
Other names: A. caulinodans ORS 571, Azorhizobium caulinodans ORS 571, Azorhizobium caulinodans str. ORS 571, Azorhizobium caulinodans strain ORS 571, Rhizobium sp. ORS 571
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