STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trbIConserved hypothetical protein; Bacterial conjugation TrbI-like protein. (393 aa)    
Predicted Functional Partners:
trbE
ATPase precursor.
 
 
 0.999
trbG
Conjugal transfer protein; VirB9/CagX precursor.
 0.999
trbC
Conjugal transfer protein.
 
  
 0.998
trbL
Conjugal transfer protein.
 
  
 0.998
trbF
Conjugal transfer protein.
  
 0.998
trbB
Conjugal transfer protein.
 
  
 0.997
trbD
Conjugal transfer protein.
 
  
 0.997
trbJ
Conjugal transfer protein.
 
  
 0.997
AZC_3868
Hypothetical protein.
 
   
 0.955
AZC_3863
Hypothetical protein.
 
     0.951
Your Current Organism:
Azorhizobium caulinodans
NCBI taxonomy Id: 438753
Other names: A. caulinodans ORS 571, Azorhizobium caulinodans ORS 571, Azorhizobium caulinodans str. ORS 571, Azorhizobium caulinodans strain ORS 571, Rhizobium sp. ORS 571
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.