STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cobW-3Cobalamin synthesis protein. (342 aa)    
Predicted Functional Partners:
cobN
Cobalt chelatase.
 
  
 0.947
AZC_3933
Putative metal-binding protein.
 
    0.771
AZC_3942
precorrin-6Y C5,15-methyltransferase; Decarboxylating protein.
 
   
 0.746
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.571
AZC_0564
ABC transporter periplasmic binding protein precursor; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.521
cobK
Precorrin-6x reductase; CbiJ/CobK.
 
   
 0.516
dksA
Zn-finger protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.
  
  
 0.503
AZC_3937
precorrin-8X methylmutase.
 
   
 0.487
rpmB
Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.471
AZC_3938
Precorrin-2 C20-methyltransferase; Belongs to the precorrin methyltransferase family.
 
   
 0.436
Your Current Organism:
Azorhizobium caulinodans
NCBI taxonomy Id: 438753
Other names: A. caulinodans ORS 571, Azorhizobium caulinodans ORS 571, Azorhizobium caulinodans str. ORS 571, Azorhizobium caulinodans strain ORS 571, Rhizobium sp. ORS 571
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