STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AZC_4375ABC transporter substrate binding protein. (339 aa)    
Predicted Functional Partners:
AZC_4374
ABC transporter permease protein.
 
  
 0.896
AZC_4373
ABC transporter ATP-binding protein.
 
    0.842
AZC_4371
Putative short-chain dehydrogenase.
  
    0.656
AZC_4372
Asp/Glu racemase.
       0.646
AZC_4370
Putative dehydrogenase.
       0.629
gntR-27
Regulatory protein.
       0.550
AZC_4377
Putative chrolohydrolase.
       0.550
AZC_2472
Bacterial periplasmic substrate-binding protein.
  
     0.534
AZC_2471
ABC transporter.
 
    0.460
AZC_2470
ABC transporter.
 
    0.459
Your Current Organism:
Azorhizobium caulinodans
NCBI taxonomy Id: 438753
Other names: A. caulinodans ORS 571, Azorhizobium caulinodans ORS 571, Azorhizobium caulinodans str. ORS 571, Azorhizobium caulinodans strain ORS 571, Rhizobium sp. ORS 571
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