STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fecR-3Putative iron siderophore sensor protein. (315 aa)    
Predicted Functional Partners:
fecI-2
FecI-like protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
 0.962
AZC_4433
Putative TonB-dependent receptor.
 
 
 0.946
fecR
FecR protein.
  
 
 
0.926
fecR-2
Putative iron siderophore sensor protein.
  
  
 
0.914
fecI
FecI-like protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.837
AZC_0182
Putative outer membrane receptor protein; Mostly Fe transport.
 
 
 0.832
pvdS
Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.832
AZC_3238
RNA polymerase sigma-70 factor; ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
 
 0.831
AZC_3240
TonB-dependent siderophore receptor precursor.
 
  
 0.760
AZC_1333
TonB-dependent receptor.
 
  
 0.731
Your Current Organism:
Azorhizobium caulinodans
NCBI taxonomy Id: 438753
Other names: A. caulinodans ORS 571, Azorhizobium caulinodans ORS 571, Azorhizobium caulinodans str. ORS 571, Azorhizobium caulinodans strain ORS 571, Rhizobium sp. ORS 571
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