STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AZC_4516Putative peptidase M23B protein. (668 aa)    
Predicted Functional Partners:
AZC_3625
Penicillin-binding protein 1A precursor.
 
   
 0.679
AZC_0337
Penicillin-binding protein 1A.
  
   
 0.668
AZC_1099
Penicillin-binding protein 1A.
  
   
 0.656
AZC_4134
Putative filament-A precursor.
 
   
 0.643
AZC_2003
Peptidase S26A; Belongs to the peptidase S26 family.
 
  
 0.582
secF
SecF protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
 
   
 0.556
secD
SecD export membrane protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
 
   
 0.515
AZC_4133
Peptidase S41A protein; C-terminal protease precursor; Belongs to the peptidase S41A family.
 
 
 0.493
AZC_4554
Cell division protein precursor; Belongs to the SEDS family.
 
  
 0.464
AZC_4517
Pirin-like protein; Belongs to the pirin family.
       0.463
Your Current Organism:
Azorhizobium caulinodans
NCBI taxonomy Id: 438753
Other names: A. caulinodans ORS 571, Azorhizobium caulinodans ORS 571, Azorhizobium caulinodans str. ORS 571, Azorhizobium caulinodans strain ORS 571, Rhizobium sp. ORS 571
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