STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000733935_00952Unannotated protein. (255 aa)    
Predicted Functional Partners:
GCA_000733935_02103
Unannotated protein.
  
 0.998
GCA_000733935_00954
Unannotated protein.
 
  
 0.983
GCA_000733935_03791
Unannotated protein.
 
  
 0.977
GCA_000733935_00257
Unannotated protein.
 
  
 0.930
GCA_000733935_02104
Unannotated protein.
 
   
 0.877
GCA_000733935_00953
Unannotated protein.
  
    0.876
GCA_000733935_00956
Unannotated protein.
 
    0.861
GCA_000733935_03157
Unannotated protein.
 
   
 0.846
GCA_000733935_01238
Unannotated protein.
      0.843
GCA_000733935_01398
Unannotated protein.
 
   
 0.833
Your Current Organism:
Methylomarinum vadi
NCBI taxonomy Id: 438855
Other names: DSM 18976, JCM 13665, M. vadi, Methylococcaceae bacterium IT-4, Methylococcaceae bacterium T2-1, Methylomarinum vadi Hirayama et al. 2013, strain IT-4
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.