STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000733935_01892Unannotated protein. (274 aa)    
Predicted Functional Partners:
GCA_000733935_01891
Unannotated protein.
       0.790
GCA_000733935_01890
Unannotated protein.
       0.766
GCA_000733935_03783
Unannotated protein.
  
 
 0.765
GCA_000733935_00961
Unannotated protein.
  
     0.750
GCA_000733935_02128
Unannotated protein.
  
     0.719
GCA_000733935_02392
Unannotated protein.
  
     0.678
GCA_000733935_02127
Unannotated protein.
  
     0.676
GCA_000733935_02045
Unannotated protein.
  
     0.663
GCA_000733935_03803
Unannotated protein.
  
 
  0.639
GCA_000733935_01996
Unannotated protein.
 
  
 0.637
Your Current Organism:
Methylomarinum vadi
NCBI taxonomy Id: 438855
Other names: DSM 18976, JCM 13665, M. vadi, Methylococcaceae bacterium IT-4, Methylococcaceae bacterium T2-1, Methylomarinum vadi Hirayama et al. 2013, strain IT-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.