STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000733935_02428Unannotated protein. (164 aa)    
Predicted Functional Partners:
GCA_000733935_02429
Unannotated protein.
       0.782
GCA_000733935_02058
Unannotated protein.
 
 
 0.778
GCA_000733935_03882
Unannotated protein.
  
 
  0.716
GCA_000733935_03884
Unannotated protein.
  
 
  0.716
GCA_000733935_02517
Unannotated protein.
    
  0.713
GCA_000733935_03169
Unannotated protein.
  
 
 0.517
GCA_000733935_02889
Unannotated protein.
  
 
 0.514
GCA_000733935_03999
Unannotated protein.
    
 0.493
GCA_000733935_01827
Unannotated protein.
  
 
 0.488
GCA_000733935_02430
Unannotated protein.
       0.480
Your Current Organism:
Methylomarinum vadi
NCBI taxonomy Id: 438855
Other names: DSM 18976, JCM 13665, M. vadi, Methylococcaceae bacterium IT-4, Methylococcaceae bacterium T2-1, Methylomarinum vadi Hirayama et al. 2013, strain IT-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.