STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000733935_03613Unannotated protein. (556 aa)    
Predicted Functional Partners:
GCA_000733935_03612
Unannotated protein.
 
 0.999
GCA_000733935_03614
Unannotated protein.
 
 
 0.999
GCA_000733935_03615
Unannotated protein.
 
 
 0.999
GCA_000733935_00345
Unannotated protein.
  
 0.935
GCA_000733935_00802
Unannotated protein.
  
 0.935
GCA_000733935_00593
Unannotated protein.
  
  
 
0.847
GCA_000733935_03967
Unannotated protein.
 
   
 0.821
GCA_000733935_00697
Unannotated protein.
 
   
 0.795
GCA_000733935_03591
Unannotated protein.
   
 0.795
GCA_000733935_00696
Unannotated protein.
 
     0.791
Your Current Organism:
Methylomarinum vadi
NCBI taxonomy Id: 438855
Other names: DSM 18976, JCM 13665, M. vadi, Methylococcaceae bacterium IT-4, Methylococcaceae bacterium T2-1, Methylomarinum vadi Hirayama et al. 2013, strain IT-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.