STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000733935_03962Unannotated protein. (519 aa)    
Predicted Functional Partners:
GCA_000733935_03961
Unannotated protein.
 0.999
GCA_000733935_03859
Unannotated protein.
     
 0.866
GCA_000733935_02649
Unannotated protein.
     
 0.861
GCA_000733935_00399
Unannotated protein.
     
 0.852
GCA_000733935_03062
Unannotated protein.
   
    0.729
GCA_000733935_01991
Unannotated protein.
 
  
 
0.681
GCA_000733935_04056
Unannotated protein.
   
    0.558
GCA_000733935_02701
Unannotated protein.
     
 0.501
GCA_000733935_00313
Unannotated protein.
   
  
 0.500
GCA_000733935_02092
Unannotated protein.
   
  
 0.437
Your Current Organism:
Methylomarinum vadi
NCBI taxonomy Id: 438855
Other names: DSM 18976, JCM 13665, M. vadi, Methylococcaceae bacterium IT-4, Methylococcaceae bacterium T2-1, Methylomarinum vadi Hirayama et al. 2013, strain IT-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.