STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB35956.1Cell fate regulator YaaT, PSP1 superfamily (controls sporulation, competence, biofilm development). (266 aa)    
Predicted Functional Partners:
rny
Ribonucrease Y; Endoribonuclease that initiates mRNA decay.
 
  
 0.830
SDB35943.1
DNA polymerase-3 subunit delta'.
  
    0.830
SDB35970.1
Regulator of replication initiation timing; Involved in initiation control of chromosome replication. Belongs to the YabA family.
  
    0.828
rsmI
16S rRNA (cytidine1402-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
    0.818
tmk
dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
  
    0.805
pyrK
Dihydroorotate dehydrogenase electron transfer subunit; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+).
 
    0.603
SDB35917.1
Acetoin utilization protein AcuB.
       0.575
SDB35774.1
Cell fate regulator YlbF, YheA/YmcA/DUF963 family (controls sporulation, competence, biofilm development); Belongs to the UPF0342 family.
 
   
 0.524
SDB36000.1
Ammonium transporter.
       0.458
pyrD-2
Dihydroorotate oxidase B, catalytic subunit; Catalyzes the conversion of dihydroorotate to orotate.
  
    0.451
Your Current Organism:
Streptococcus henryi
NCBI taxonomy Id: 439219
Other names: DSM 19005, S. henryi, Streptococcus henryi Milinovich et al. 2008, strain 126
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.