STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB25792.1Para-nitrobenzyl esterase. (485 aa)    
Predicted Functional Partners:
rpsD
SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
    
  0.759
SKB25774.1
MFS transporter, AAHS family, 4-hydroxybenzoate transporter.
       0.752
rpsK
SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
    
  0.740
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
 0.721
SKB97405.1
ATP-dependent helicase HrpB.
    
 0.702
rnd
Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family.
    
  0.683
SKB81275.1
Ribonuclease D.
    
  0.683
SKB27293.1
Zn-dependent amino-or carboxypeptidase, M28 family.
 
 0.642
SKC10004.1
Zn-dependent amino-or carboxypeptidase, M28 family.
 
 0.642
SKB79510.1
Zn-dependent amino-or carboxypeptidase, M28 family.
 
 0.631
Your Current Organism:
Sphingomonas histidinilytica
NCBI taxonomy Id: 439228
Other names: CCM 7545, MTCC 9473, S. histidinilytica, Sphingomonas histidinilytica Nigam et al. 2010, Sphingomonas sp. UM2, strain UM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.