STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB89550.1Protein of unknown function. (71 aa)    
Predicted Functional Partners:
SKB25470.1
Protein of unknown function.
  
     0.723
cysC
Adenylylsulfate kinase /sulfate adenylyltransferase subunit 1; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
    
  0.680
SKB89529.1
Hypothetical protein.
       0.629
SKC07252.1
Myo-inositol-1-phosphate synthase.
  
 
 0.611
SKB89500.1
Hypothetical protein.
       0.605
rpsD
SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
 
 
 0.588
hisB
Imidazoleglycerol-phosphate dehydratase.
  
 
 0.576
nusA
NusA antitermination factor; Participates in both transcription termination and antitermination.
   
   0.572
SKB89543.1
Phospholipid transport system substrate-binding protein.
       0.570
SKB62436.1
Hypothetical protein.
  
     0.565
Your Current Organism:
Sphingomonas histidinilytica
NCBI taxonomy Id: 439228
Other names: CCM 7545, MTCC 9473, S. histidinilytica, Sphingomonas histidinilytica Nigam et al. 2010, Sphingomonas sp. UM2, strain UM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.