STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB93566.1Cobaltochelatase CobT subunit. (612 aa)    
Predicted Functional Partners:
SKB93590.1
Cobaltochelatase CobS subunit.
 
 
 0.995
SKB93652.1
DnaJ domain-containing protein.
 
     0.914
SKB70269.1
ATP:cob(I)alamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
    
  0.876
SKB93580.1
Protein-tyrosine phosphatase.
       0.773
atpF
F-type H+-transporting ATPase subunit b; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.740
SKB71115.1
ATP-dependent helicase/nuclease subunit B.
  
     0.649
SKB58136.1
GcrA cell cycle regulator.
  
     0.642
SKB62042.1
Hypothetical protein.
  
     0.625
SKB71829.1
Hypothetical protein.
  
     0.622
SKB27123.1
Hypothetical protein.
  
     0.617
Your Current Organism:
Sphingomonas histidinilytica
NCBI taxonomy Id: 439228
Other names: CCM 7545, MTCC 9473, S. histidinilytica, Sphingomonas histidinilytica Nigam et al. 2010, Sphingomonas sp. UM2, strain UM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.