STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC05107.1Stress responsive A/B Barrel Domain. (135 aa)    
Predicted Functional Partners:
SKC05099.1
Sugar phosphate isomerase/epimerase.
 
     0.799
SKC05198.1
Fucose permease.
  
     0.763
SKB87984.1
Gluconate 2-dehydrogenase subunit 3.
  
     0.759
SKC05173.1
Gluconate 2-dehydrogenase subunit 3.
  
     0.739
SKC05116.1
Protein of unknown function.
  
     0.687
SKC05164.1
FAD dependent oxidoreductase.
  
     0.683
SKB87990.1
Choline dehydrogenase.
  
     0.652
SKC05183.1
Predicted dehydrogenase.
  
     0.626
SKC05191.1
Sugar phosphate isomerase/epimerase.
  
     0.609
SKB25131.1
Lysophospholipase L1.
  
     0.608
Your Current Organism:
Sphingomonas histidinilytica
NCBI taxonomy Id: 439228
Other names: CCM 7545, MTCC 9473, S. histidinilytica, Sphingomonas histidinilytica Nigam et al. 2010, Sphingomonas sp. UM2, strain UM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.