STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC15131.1AMP-binding enzyme C-terminal domain-containing protein. (251 aa)    
Predicted Functional Partners:
SKC15122.1
Pyruvate dehydrogenase E1 component beta subunit.
    
  0.793
SKC15126.1
Pyruvate dehydrogenase E1 component alpha subunit.
       0.773
SKB42475.1
acyl-CoA ligase (AMP-forming), exosortase A-associated.
 
     0.738
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.734
SKB79253.1
Cytochrome P450.
   
 0.715
SKB29915.1
Short chain enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.671
SKB38919.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.671
SKB99423.1
3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.671
SKB27390.1
Undecaprenyl-diphosphatase.
    
  0.613
SKB94586.1
Acid phosphatase (class A).
    
  0.613
Your Current Organism:
Sphingomonas histidinilytica
NCBI taxonomy Id: 439228
Other names: CCM 7545, MTCC 9473, S. histidinilytica, Sphingomonas histidinilytica Nigam et al. 2010, Sphingomonas sp. UM2, strain UM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.