STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_0109TIGRFAM: ribosomal protein S21; KEGG: pde:Pden_2267 30S ribosomal protein S21; IMG reference gene:2503005804; PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21. (66 aa)    
Predicted Functional Partners:
Dalk_1195
PFAM: ribosomal protein S20; KEGG: sfu:Sfum_2087 ribosomal protein S20; IMG reference gene:2503006897; PFAM: Ribosomal protein S20; TIGRFAM: ribosomal protein S20.
  
 0.997
Dalk_1916
PFAM: ribosomal protein S10; KEGG: dol:Dole_0707 ribosomal protein S10; IMG reference gene:2503007628; PFAM: Ribosomal protein S10p/S20e; TIGRFAM: ribosomal protein S10, bacterial/organelle.
  
 0.997
Dalk_4649
PFAM: ribosomal protein S16; KEGG: lme:LEUM_1485 SSU ribosomal protein S16P; IMG reference gene:2503010405; PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16.
  
 0.997
Dalk_4742
PFAM: ribosomal protein S15; KEGG: gur:Gura_1905 30S ribosomal protein S15; IMG reference gene:2503010499; PFAM: Ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial/organelle.
   
 0.997
Dalk_0918
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; IMG reference gene:2503006619; PFAM: Ribosomal protein S18; TIGRFAM: ribosomal protein S18.
   
 0.996
Dalk_0919
PFAM: ribosomal protein S6; KEGG: dol:Dole_0010 ribosomal protein S6; IMG reference gene:2503006620; PFAM: Ribosomal protein S6; TIGRFAM: ribosomal protein S6.
   
 0.996
Dalk_1919
Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; IMG reference gene:2503007631; PFAM: Ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacterial/organelle.
   
 0.996
Dalk_3165
PFAM: ribosomal protein S2; KEGG: dol:Dole_0474 ribosomal protein S2; IMG reference gene:2503008894; PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type.
  
 0.996
Dalk_1890
PFAM: ribosomal protein S4; RNA-binding S4 domain protein; KEGG: gsu:GSU2832 30S ribosomal protein S4; IMG reference gene:2503007602; PFAM: Ribosomal protein S4/S9 N-terminal domain; S4 domain; TIGRFAM: ribosomal protein S4, bacterial/organelle type.
  
 0.994
Dalk_1918
Ribosomal protein S7; Binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; IMG reference gene:2503007630; PFAM: Ribosomal protein S7p/S5e; TIGRFAM: ribosomal protein S7, bacterial/organelle.
   
 0.994
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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