STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_0141PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rci:RCIX762 putative amidohydrolase; IMG reference gene:2503005836; PFAM: Carbon-nitrogen hydrolase. (311 aa)    
Predicted Functional Partners:
Dalk_4144
Pyruvate-ferredoxin oxidoreductase, alpha subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; IMG reference gene:2503009890; PFAM: Domain of unknown function; domain; Pyruvate ferredoxin/flavodoxin oxidoreductase; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: pyruvate:ferredoxin (flavodoxin [...]
  
 
  0.845
Dalk_0518
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; glutamate synthase alpha subunit domain protein; KEGG: sfu:Sfum_1723 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; IMG reference gene:2503006218; PFAM: Pyridine nucleotide-disulphide oxidoreductase; GXGXG motif.
    
 0.767
Dalk_3456
KEGG: ypb:YPTS_0831 tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; IMG reference gene:2503009188; PFAM: Fumarase C-terminus; Fumarate hydratase (Fumerase); TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region.
    
  0.742
Dalk_3943
PFAM: Proline dehydrogenase; Aldehyde Dehydrogenase; KEGG: tdn:Suden_1327 delta-1-pyrroline-5-carboxylate dehydrogenase / L-proline dehydrogenase; IMG reference gene:2503009687; PFAM: Proline dehydrogenase; Aldehyde dehydrogenase family.
   
 0.729
Dalk_3486
TIGRFAM: cytidyltransferase-related domain protein; KEGG: npu:Npun_F0631 ATPase/kinase involved in NAD metabolism; IMG reference gene:2503009218; TIGRFAM: nicotinamide-nucleotide adenylyltransferase, NadR type; cytidyltransferase-related domain.
    
 0.718
Dalk_0142
PFAM: sodium/hydrogen exchanger; KEGG: scl:sce4348 sodium/hydrogen exchanger family protein; IMG reference gene:2503005837; PFAM: Sodium/hydrogen exchanger family.
       0.658
Dalk_0143
Hypothetical protein Dalk_0143; KEGG: mxa:MXAN_3848 sodium/hydrogen exchanger family protein; IMG reference gene:2503005838.
       0.658
Dalk_0215
Dihydropyrimidine dehydrogenase (NADP(+)); PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD dependent oxidoreductase; Fe-S cluster domain protein; KEGG: dol:Dole_2825 electron transport complex, RnfABCDGE type, B subunit; IMG reference gene:2503005911; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Putative Fe-S cluster; 4Fe-4S binding domain.
 
  
 0.648
Dalk_0725
PFAM: NifH/frxC-family protein; oxidoreductase/nitrogenase component 1; KEGG: dsy:DSY3862 putative nitrogenase subunit NifH; IMG reference gene:2503006426; PFAM: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; Nitrogenase component 1 type Oxidoreductase; TIGRFAM: nitrogenase iron protein.
    
 0.632
Dalk_3586
PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase; KEGG: gka:GK0199 aldehyde dehydrogenase; IMG reference gene:2503009318; PFAM: Aldehyde dehydrogenase family; Iron-containing alcohol dehydrogenase.
   
 0.612
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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