STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_0172PFAM: SAF domain protein; KEGG: tpd:Teth39_1678 SAF domain-containing protein; IMG reference gene:2503005867; PFAM: SAF domain. (88 aa)    
Predicted Functional Partners:
Dalk_0173
PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; KEGG: stm:STM0650 putative hydrolas; IMG reference gene:2503005868; PFAM: D-galactarate dehydratase / Altronate hydrolase, C terminus.
 
 
  0.981
Dalk_2461
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: nph:NP0998A mandelate racemase/muconate lactonizing family protein; IMG reference gene:2503008182; PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain.
 
  
 0.710
Dalk_0556
Ribulose-5-phosphate-epimerase; PFAM: ribulose-phosphate 3-epimerase; KEGG: dol:Dole_2229 ribulose-phosphate 3-epimerase; IMG reference gene:2503006257; PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase.
     
 0.574
Dalk_4106
TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: dol:Dole_2667 dihydrodipicolinate synthase; IMG reference gene:2503009852; PFAM: Dihydrodipicolinate synthetase family; TIGRFAM: dihydrodipicolinate synthase.
    
 0.559
Dalk_1962
PFAM: PfkB domain protein; KEGG: dol:Dole_2854 ribokinase-like domain-containing protein; IMG reference gene:2503007679; PFAM: pfkB family carbohydrate kinase.
    
 0.554
Dalk_2985
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: ent:Ent638_0458 regulatory protein, IclR; IMG reference gene:2503008712; PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator.
 
  
 0.550
Dalk_4335
PFAM: PfkB domain protein; KEGG: yen:YE2605 putative sugar kinase; IMG reference gene:2503010083; PFAM: pfkB family carbohydrate kinase.
    
 0.526
Dalk_1667
PFAM: dihydrodipicolinate synthetase; KEGG: cpo:COPRO5265_1180 dihydrodipicolinate synthase (DHDPS); IMG reference gene:2503007377; PFAM: Dihydrodipicolinate synthetase family.
    
 0.523
Dalk_0171
PFAM: cyclic nucleotide-binding; KEGG: ava:Ava_1692 cyclic nucleotide-binding protein; IMG reference gene:2503005866; PFAM: Cyclic nucleotide-binding domain.
       0.485
Dalk_0259
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mva:Mvan_0894 short-chain dehydrogenase/reductase SDR; IMG reference gene:2503005955; PFAM: short chain dehydrogenase.
    
 0.458
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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