STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_0325PFAM: beta-lactamase domain protein; KEGG: lme:LEUM_1912 mRNA degradation ribonuclease J1/J2, metallo-beta-lactamase superfamily enzyme; IMG reference gene:2503006022; PFAM: Metallo-beta-lactamase superfamily. (274 aa)    
Predicted Functional Partners:
Dalk_4089
PFAM: beta-lactamase domain protein; KEGG: pmo:Pmob_1890 beta-lactamase domain protein; IMG reference gene:2503009834; PFAM: Metallo-beta-lactamase superfamily.
  
     0.773
Dalk_4271
KEGG: dol:Dole_3045 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; IMG reference gene:2503010019; PFAM: Pterin binding enzyme; TIGRFAM: dihydropteroate synthase.
     
 0.748
Dalk_2264
Cobyrinic acid ac-diamide synthase; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Cobyrinic acid ac-diamide synthase; KEGG: glo:Glov_1688 cobyrinic acid ac-diamide synthase; IMG reference gene:2503007984; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain.
 
     0.728
Dalk_2263
Cobyrinic acid ac-diamide synthase; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Cobyrinic acid ac-diamide synthase; KEGG: dps:DP0339 hypothetical protein; IMG reference gene:2503007983; PFAM: 4Fe-4S binding domain; CobQ/CobB/MinD/ParA nucleotide binding domain.
 
     0.711
Dalk_2265
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: ppd:Ppro_1950 dinitrogenase iron-molybdenum cofactor biosynthesis; IMG reference gene:2503007985; PFAM: Dinitrogenase iron-molybdenum cofactor.
 
     0.642
Dalk_2262
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: pth:PTH_0582 hypothetical protein; IMG reference gene:2503007982; PFAM: Dinitrogenase iron-molybdenum cofactor.
 
     0.581
Dalk_1756
PFAM: protein of unknown function DUF89; KEGG: dol:Dole_1580 hypothetical protein; IMG reference gene:2503007467; PFAM: Protein of unknown function DUF89.
 
     0.551
Dalk_2067
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dsy:DSY0274 hypothetical protein; IMG reference gene:2503007784; PFAM: Dinitrogenase iron-molybdenum cofactor.
 
     0.494
Dalk_1748
PFAM: 4'-phosphopantetheinyl transferase; KEGG: cbd:CBUD_0153 hypothetical protein; IMG reference gene:2503007459; PFAM: 4'-phosphopantetheinyl transferase superfamily.
    
  0.472
Dalk_1781
PFAM: Radical SAM domain protein; KEGG: mem:Memar_1142 radical SAM domain-containing protein; IMG reference gene:2503007492; PFAM: FaeA-like protein; Radical SAM superfamily.
 
     0.463
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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